ORFeome data can be downloaded from ftp://www.orfeomecollaboration.org/orfeome/orfeome_data/cumulative/
ORFeome Clones can be purchased from
Dana-Farber/Harvard Cancer Center
ASU’s DNASU Plasmid Repository
Invitrogen (Ultimate™ ORF)
GeneCopoeia
Summary of Vectors and Flanking Sequences in ORFeome Clones (10/1/08)
(Sequences read from 5' (from the promoter) to 3' as they would appear in the vector)
Clone
Source £ |
Donor
Vector |
Entry
Vector
(type att site) |
5' End of attL1.x + Seq to ATG |
3' End of ORF to attL2.x |
MGC
Synthetic |
pDONR223.1 |
pENTR223.1
(att1-att2)
SpnR |
-G TAC AAA AAA GCA GAA GGG CCG TCA AGG CCC ACC ATG
Y K K A E G P S R P T |
-NNN-TAA/G GGC CTC ATG GGC CCA GCT TTC TTG TAC
* G L M G P A F L Y |
MGC
Synthetic |
pDONR223.1 |
pENTR223.1
(att1-att2)
SpnR |
-G TAC AAA AAA GCA GAA GGG CCG TCA AGG CCC ACC ATG
Y K K A E G P S R P T |
-NNN-TCA GGC CTC ATG GGC CCA GCT TTC TTG TAC
S G L M G P A F L Y |
| WTSI |
pDONR223 |
pENTR223
(att1.1-att2.1)
SpnR |
-G TAC AAA AAA GTT GGC ACC ATG
Y K K V G T |
-NNN-CCA ACT TTC TTG TAC-
P T F L Y |
DFCI-
CCSB
(ORFeome 1&3) |
pDONR223 |
pENTR223
(att1.1-att2.1)
SpnR |
-G TAC AAA AAA GTT GGC ATG
Y K K V G |
-TA/GC CCA ACT TTC TTG TAC- TRC replaces stop
P T F L Y |
DFCI-
CCSB
(ORFeome 5&7) |
pDONR223 |
pENTR223
(att1.1-att2.1)
SpnR |
-G TAC AAA AAA GTT GGC ACC ATG
Y K K V G T |
-NNN-TTG CCA ACT TTC TTG TAC- TTG replaces stop
L P T F L Y |
| HIP |
pDONR221§ |
pENTR221
(att1-att2)
KnR |
-G TAC AAA AAA GCA GGC TCC ACC ATG
Y K K A G S T |
-TAG-GAC CCA GCT TTC TTG TAC
* D P A F L Y |
| HIP |
pDONR221§ |
pENTR221
(att1-att2)
KnR |
-G TAC AAA AAA GCA GGC TCC ACC ATG
Y K K A G S T |
-TTG-GAC CCA GCT TTC TTG TAC
L D P A F L Y |
| Kazusa |
pDONR201§ |
pENTR201
(att1-att2)
KnR |
-G TAC AAA AAA GCA GGC TTC GAA GGA GAT AGA ACC ATG
Y K K A G F E G D R T |
-TAA GTA GAC CCA GCT TTC TTG TAC
* V D P A F L Y |
| Kazusa |
pDONR201§ |
pENTR201
(att1-att2)
KnR |
-G TAC AAA AAA GCA GGC TTC GAA GGA GAT AGA ACC ATG
Y K K A G F E G D R T |
-TAC GTA GAC CCA GCT TTC TTG TAC
Y V D P A F L Y |
| DKFZ |
pDONR221§ |
pENTR221
(KnR) |
-G TAC AAA AAA GCA GGC TCC ACC ATG-
Y K K A G S T |
-TGA ATC CAC CCA GCT TTC TTG TAC-
* I H P A F L Y |
| DKFZ |
pDONR221§ |
pENTR221
(KnR) |
-G TAC AAA AAA GCA GGC TCC ACC ATG-
Y K K A G S T |
-TGG ATC CAC CCA GCT TTC TTG TAC-
W I H P A F L Y |
| DKFZ |
pDONR221§ |
pENTR221
(KnR) |
-G TAC AAA AAA GCA GGC TCC ACC ATG-
Y K K A G S T |
-AAG CTT GAC CCA GCT TTC TTG TAC-
K L D P A F L Y |
| DKFZ |
pDONR221§ |
pENTR221
(KnR) |
-G TAC AAA AAA GCA GGC TCC ACC ATG-
Y K K A G S T |
-TGT ATT CAC CCA GCT TTC TTG TAC-
C I H P A F L Y |
| DKFZ |
pDONR221§ |
pENTR221
(KnR) |
-G TAC AAA AAA GCT GGC ACC ATG-
Y K K A G T |
-GGC GAC CCA GCT TTC TTG TAC-
G D P A F L Y |
| DKFZ |
pDONR221§ |
pENTR221
(KnR) |
-G TAC AAA AAA GCA GGC TCC ACC ATG-
Y K K A G S T |
-TAG CTT GAC CCA GCT TTC TTG TAC-
* L D P A F L Y |
| DKFZ |
pDONR221§ |
pENTR221
(KnR) |
-G TAC AAA AAA GCA GGC TCC ACC ATG-
Y K K A G S T |
-TGA ATT CAC CCA GCT TTC TTG TAC-
* I P P A F L Y |
| DKFZ |
pDONR201§ |
pENTR201
(KnR) |
-G TAC AAA AAA GCT GGC ACC ATG-
Y K K A G T |
-GGC GAC CCA GCT TTC TTG TAC-
G D P A F L Y |
| DKFZ |
pDONR201§ |
pENTR201
(KnR) |
-G TAC AAA AAA GCT GGC ACC ACC ATG-
Y K K A G T |
-TAG GGC GAC CCA GCT TTC TTG TAC-
* G D P A F L Y |
| DKFZ |
None |
pENTR/D-
TOPO*
(KnR) |
-G TAC AAA AAA GCA GGC TCC GCG GCC GCC CCC TTC ACC ATG-
Y K K A G S A A A P F T |
-AGG GGT GGG CGC GCC GAC CCA GCT TTC TTG TAC-
K G G R A D P A F L Y |
Permalink
October 31, 2011 at 10:13 pm
·
Advantages of Excellgen’s LvExpress Lentivirus Production and Purification services
- Lightning Fast Cloning: Transfer GOI from Gateway donor vector to lentivirus vector in just 1 hour using Gateway LR Clonase. The latest hORFeome (v7.1) collection has 18,414 human ORFs representing at least 15,415 human genes. This set of libary or indvidual clone can be purchased from Dana-Farber/Harvard Cancer Center or ASU’s DNASU Plasmid Repository.
- Reliable: Generate high titer lentivirus in only 5 days even if the gene is toxic.
- Scalable: Lentivirus production can be scaled up to 1 or 10 L of cultured cells.
- Fast Turnaround: Maximum 3 weeks are required for cloning, generation of high titer lentivirus and virus purification.
- Strong CMV5 Promoter: Exceptional high level protein
expression using CMV5-intron promoter in most cell types including
dividing and non-dividing or primary cells.
- High Titer: from 106 to 1010 TU/ml
- High Yield: up to 1011 TU
- High Purity: Purify virus by FPLC or ultracentrifugation.
- Flexiable: shRNA for gene knockdown; cDNA: high level protein expression using CMV5 promoter.
- Promoter of Your Choice: mCMV, hCMV, EF-1alpha, CMV5, CAG, etc.
- Reporters: EGFP, monomeric GFP, RFP, iREP, Luciferases.
- Adenovirus-Lentivirus Hybrid System: Produce lentivirus in vivo from high titer adenovirus. Long-term expression of multiple genes with only one adenovirus vector.
LvExpressTM Lentivirus Services:
1, Clone gene of interest into a lentivirus vector.
2, Large scale lentivirus production in 293 cells.
3. Lentivirus purification by ultracentrifugation and FPLC.
4, Titer determination.
Permalink
October 31, 2011 at 9:34 pm
·
AdExpressTM Adenovirus System has been recently
co-developed by Excellgen and Feldan (http://www.feldan.com/), this new
adenovirus system offers the following advantages
- Lightning Fast Cloning: Transfer GOI from Gateway donor vector to adenovirus shuttle vector in just 1 hour using Gateway LR Clonase. The latest hORFeome (v7.1) collection has 18,414 human ORFs representing at least 15,415 human genes. This set of libary or indvidual clone can be purchased from Dana-Farber/Harvard Cancer Center or ASU’s DNASU Plasmid Repository.
- Reliable: Generate high titer crude adenovirus stock in only 5 days even if the gene is toxic.
- Scalable: Adenovirus production can be scaled up to 1 or 10 L of cultured cells.
- Fast Turnaround: Maximum 2 weeks are required for cloning
and generation of high titer crude adenovirus stock. Another 2 weeks
are needed for large scale amplification and purification.
- RCA-Free: Special cell lines can be used to produce high quality replication-competent-free adenovirus.
- Strong CMV5 Promoter: Exceptional high level protein
expression using CMV5-intron promoter in most cell types including
dividing and non-dividing or primary cells.
- High Titer: Up to 1013 particles/ml or 1012 PFU/ml.
- High Purity: Adenovirus purification by CsCl ultracentrifugation and FPLC.
- Flexiable: shRNA for gene knockdown; high level protein expression using CMV5 promoter.
- Promoter of Your Choice: mCMV, hCMV, EF-1alpha, CMV5, CAG, etc.
- Reporters: EGFP, monomeric GFP, RFP, iREP, Luciferases.
- High Capacity Vector: Reduce inflammation and prolong
high-level transgene expression; GOI and promoter combined can be larger
than 8 kb; Multiple genes can be expressed together in one vector.
AdExpressTM Adenovirus Services:
1, Clone gene of interest directly into an adenovirus vector.
2, Produce crude adenovirus stock.
3, Large scale amplification, adenovirus purification by CsCl banding (ultracentrifugation) and FPLC.
4, Titer determination.
5. RCA assay.
6, Protein production in suspension cultured cells.
7. Production of high capacity helper-dependent (gut-less) adenovirus.
Permalink
October 31, 2011 at 9:32 pm
·
1. Make a HD adenovirus-lentivirus hybrid vector with Gateway cassette
-ITR–CMV-RFP-CMV-X-VSVG–CMV-Gag-Pol-Rev –5'LTR-Psi-PRE–CMV5-intron–attR1–CmR–ccdB–attR2-IRES-GFP-Puro-WPRE-3'SINLTR–ITR–Amp-Orig–
2. Make adenovirus
3. Make lentivirus using 293Ad cell line
Permalink
October 31, 2011 at 11:21 am
·
1. Make a HD adenovirus-AAV hybrid vector with Gateway cassette
–N-Rep (P6, p19)–LoxP–stop—LoxP–C-Rep (P40)–Capsid –ITR–CMV–attR1–CmR–ccdB–attR2–ITR–Amp-Orig–
2. Make adenovirus
3. Make AAV using 293Cre cell line
Permalink
October 31, 2011 at 11:11 am
·