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Archive for July, 2009

Biological safety cabinet vs laminar flow hood

Laminar Flow Hoods

* provide product protection only and must not be used when working with any form of biohazard or chemical hazard
* any potentially infectious aerosol that is created will lead to exposure of the operator and the environment
* horizontal-flow clean-air bench used for cell cultures can expose the researcher to aerosols of allergenic or infectious materials.
* vertical-flow clean-air bench also blows air out into the room

Biological Safety Cabinets

* provide personnel and environmental protection and commonly product protection
* infectious agents must be used in a biological safety cabinet NOT a laminar flow hood

Class I Biological Safety Cabinet

* a ventilated cabinet which provides personnel and environmental protection only
* air flow is directed away from the researcher, but is not HEPA filtered, therefore there is no product protection
* similar to a fume hood with a HEPA filter on the exhaust system to protect against the release of biohazards
* inward air flow ranges from 75-125 linear feet per minute (lfpm)
* can be used with radioisotopes and some toxic chemicals

Class II Biological Safety Cabinet

* provides personnel, product and environmental protection
* there are supply air and exhaust air HEPA filters
* two general types: IIA cabinets have a minimum inward air flow of 75 lfpm and recirculates 70% of the air; IIB cabinets have a minimum inward air flow of 100 lfpm and exhaust either 70% (type B1) or 100% (type B2)
* most of the biological safety cabinets at UVic are Class II

Class III Biological Safety Cabinet

* these cabinets provide personnel, product and environmental protection
* they are hermetically sealed and all procedures are conducted through arm-length rubber gloves
* used in high level (Level 4) containment labs
* there are two HEPA filters on the exhaust system

Comments

July 30, 2009 at 10:56 pm ·

Automated search of NCBI Pubmed databases

Here is how I search NCBI PubMed using script.

1, Write a script in Perl or Java to search pubmed by date and keyword.

2, If there is “next” link on the result page, let script to click on “next” link until there is no more “next” link.

3, extract abstract link from search result pages

4, pause 15~ 25  seconds between each click.

5, click each abstract page, make sure efetch is used, e.g.,

http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pubmed&id=19501051&retmode=xml

http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&id=2708341

6, parse abstract using an XML parser.

Comments

July 26, 2009 at 9:24 pm ·

Properties of Common Commercial Acids and Bases

Properties of Common
Commercial Acids and Bases

NAME,
Formula

Molar

Mass

Mol/L

(Molarity)

(Grams solute)/L % by
Mass
Density
(g/mL)
acetic acid, glacial,
HC2H3O2
60.05 17.4 1045 99.5 1.05
acetic acid, dilute
HC2H3O2
60.05 6.27 376 36 1.045
butyric acid,
HC4H7O2
88.1 10.3 912 95 0.96
formic acid,HCO2H 46.02 23.4 1080 90 1.20
hydroiodic acid,
HI
127.9 7.57 969 57 1.70
hydrobromic acid,
HBr
80.92 8.89 720 48 1.50
hydrochloric,
HCl
36.5 11.6 424 36 1.18
hydrocyanic acid.
HCN
27.03 25 676 36 0.697
hydrofluoric acid,
HF
20.01 32.1 642 97 1.167
hypophosphorous acid,
H3PO2
66.0 9.47 625 55 1.25
lactic acid,
HC3H5O3
90.1 11.3 1020 50 1.2
nitric acid,
HNO3
63.02 16.0 1008 71 1.42
perchloric acid,
HClO4
100.5 11.65 1172 70 1.67
phosphoric acid,
H3PO4
98 14.7 1445 85 1.70
sulfuric acid,
H2SO4
98.1 18.0 1766 96 1.84
sulfurous acid,
H2SO3
82.1 0.74 61.2 6 1.02
ammonia, aqueous,
NH3
17.0 14.8 252 28 0.898
potassium hydroxide,
KOH
56.1 13.5 757 50 1.52
sodium carbonate,
N2CO3
106.0 1.04 110 10 1.10
sodium hydroxide,
NaOH
40.0 19.1 763 50 1.53

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Comments

July 19, 2009 at 6:17 am ·